euL1db
The European database of L1-HS retrotransposon insertions in humans

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Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

79 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip251 chr1 32796632 32796632 - L1-Ta somatic validated no 616 HDAC1
srip884 chr1 56535816 56535816 - L1-Ta germline validated no 616 .
srip2022 chr1 81855784 81855784 + L1-Ta germline . no 616 .
srip8445 chr10 25707688 25707688 - L1-Ta germline . no 616 GPR158
srip13207 chr11 29463700 29463700 + L1-Ta germline . no 616 .
srip14265 chr11 41831810 41831810 - L1-Ta germline . no 616 .
srip15366 chr11 58171839 58171839 + L1-Ta germline . no 616 .
srip17215 chr11 94684376 94684376 + L1-Ta germline . no 616 .
srip18144 chr11 112084565 112084565 + L1-Ta germline . no 616 BCO2
srip19294 chr11 134305648 134305648 - L1-Ta germline validated no 616 .
srip19916 chr12 11219230 11219230 - L1-Ta germline . no 616 PRH1-PRR4
srip20880 chr12 31353756 31353756 - L1-Ta germline . no 616 OVOS2
srip27131 chr13 27487992 27487992 + L1-Ta germline . no 616 .
srip28186 chr13 48856543 48856543 + L1-Ta germline . no 616 .
srip28926 chr13 61462329 61462329 - L1-Ta germline . no 616 .
srip31696 chr13 85871617 85871617 - L1-Ta germline . no 616 .
srip35602 chr14 36674729 36674729 + L1-Ta germline . no 616 .
srip37352 chr14 59220402 59220402 + L1-Ta germline . no 616 .
srip39759 chr15 37707896 37707896 - L1-Ta germline . no 616 .
srip46356 chr16 71028058 71028058 + L1-Ta germline validated no 616 HYDIN
srip48448 chr17 68357410 68357410 + L1-Ta germline . no 616 .
srip52423 chr19 45444553 45444553 + L1-Ta germline . no 616 .
srip52778 chr2 7050509 7050509 + L1-Ta germline . no 616 .
srip53611 chr2 23191064 23191064 - L1-Ta germline . no 616 .
srip54943 chr2 53460057 53460057 + L1-Ta germline . no 616 .
srip56256 chr2 82098046 82098046 + L1-Ta germline . no 616 .
srip56909 chr2 106163165 106163165 + L1-Ta germline validated no 616 .
srip58230 chr2 141852913 141852913 - L1-Ta germline . no 616 LRP1B
srip61142 chr2 199779916 199779916 + L1-Ta germline . no 616 .
srip64759 chr20 41952104 41952104 - L1-Ta germline . no 616 .
srip66179 chr21 23626190 23626190 - L1-Ta germline . no 616 .
srip71936 chr3 38626084 38626084 + L1-Ta germline . no 616 SCN5A
srip72158 chr3 49441504 49441504 - L1-Ta germline . no 616 RHOA
srip72731 chr3 55788580 55788580 + L1-Ta germline validated no 616 ERC2
srip73436 chr3 59852905 59852905 + L1-Ta germline validated no 616 FHIT
srip73528 chr3 68043010 68043010 + L1-Ta germline . no 616 .
srip75097 chr3 84433399 84433399 + L1-Ta germline . no 616 .
srip78580 chr3 151148542 151148542 - L1-Ta germline validated no 616 MED12L
srip81667 chr3 187835313 187835313 - L1-Ta germline . no 616 .
srip82145 chr3 193354185 193354185 - L1-Ta germline validated no 616 OPA1
srip82378 chr4 10632678 10632678 - L1-Ta germline validated no 616 CLNK
srip84729 chr4 47007790 47007790 - L1-Ta germline . no 616 .
srip87097 chr4 72204596 72204596 + L1-Ta germline . no 616 SLC4A4
srip87130 chr4 77437317 77437317 + L1-Ta germline . no 616 SHROOM3
srip92252 chr4 134596425 134596425 + L1-Ta germline . no 616 .
srip92955 chr4 147225285 147225285 + L1-Ta germline validated no 616 SLC10A7
srip93849 chr4 158907270 158907270 - L1-Ta germline . no 616 .
srip96370 chr5 11391277 11391277 + L1-Ta germline validated no 616 CTNND2
srip96920 chr5 21207734 21207734 + L1-Ta germline validated no 616 .
srip98264 chr5 40041332 40041332 - L1-Ta germline . no 616 .
srip99044 chr5 52651789 52651789 - L1-Ta germline . no 616 .
srip99484 chr5 68263450 68263450 - L1-Ta germline . no 616 .
srip100800 chr5 89450784 89450784 + L1-Ta germline validated no 616 .
srip101699 chr5 105935376 105935376 + L1-Ta germline . no 616 .
srip103788 chr5 137014786 137014786 - L1-Ta germline . no 616 KLHL3
srip105589 chr5 159351203 159351203 - L1-Ta germline . no 616 ADRA1B
srip105845 chr5 165712285 165712285 + L1-Ta germline . no 616 .
srip111099 chr6 77980671 77980671 - L1-Ta germline . no 616 .
srip113336 chr6 123853936 123853936 - L1-Ta germline . no 616 TRDN
srip115054 chr6 157968734 157968734 - L1-Ta germline . no 616 ZDHHC14
srip115678 chr6 162181262 162181262 + L1-Ta germline . no 616 PARK2
srip116824 chr7 40613004 40613004 - L1-Ta germline . no 616 C7orf10
srip116883 chr7 41310791 41310791 - L1-Ta germline validated no 616 .
srip119426 chr7 84118293 84118293 - L1-pre-Ta germline . no 616 .
srip119966 chr7 84901732 84901732 - L1-Ta germline . no 616 .
srip121811 chr7 107829265 107829265 + L1-Ta germline . no 616 NRCAM
srip122124 chr7 110484745 110484745 + L1-Ta germline . no 616 IMMP2L
srip124573 chr8 5829286 5829286 - L1-Ta germline . no 616 .
srip127215 chr8 72399219 72399219 - L1-Ta germline . no 616 .
srip127532 chr8 75723720 75723720 + L1-Ta germline validated no 616 .
srip128031 chr8 83740729 83740729 + L1-Ta germline . no 616 .
srip128219 chr8 87315035 87315035 + L1-Ta germline . no 616 .
srip133386 chr9 32463888 32463888 - L1-Ta germline validated no 616 DDX58
srip135589 chr9 111564971 111564971 + L1-Ta germline . no 616 .
srip136792 chrX 29269149 29269149 - L1-Ta germline . no 616 IL1RAPL1
srip137581 chrX 55585158 55585158 - L1-Ta germline . no 616 .
srip140403 chrX 111557749 111557749 - L1-Ta germline . no 616 ZCCHC16
srip140771 chrX 119892834 119892834 - L1-Ta germline . no 616 .
srip141358 chrX 129525268 129525268 - L1-Ta germline . no 616 .